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Serious Games for Bioinformatics Education презентация
Содержание
- 1. Serious Games for Bioinformatics Education
- 2. Why games? Attention!!!
- 3. is useful for: Recruiting getting their attention Engaging holding their attention Attention
- 4. Recruiting bioinformaticians “We're hopefully going to change
- 5. Foldit players come from many backgrounds Top
- 6. Teaching with games “The use of educational
- 7. Games can be used to teach Stegman,
- 8. Finding educational bioinformatics games…
- 9. Educational games
- 10. TBG – select a protein
- 11. TBG: fly around to hit the next amino acid on your list
- 12. 4bases (Rostlab, masters thesis) Click the next
- 13. MAX5 Goal: introduce the concepts and purposes
- 14. MAX5 starting screen 1
- 15. MAX5 starting screen 2
- 16. MAX5 “blasting” to detect what a sample is infected with
- 17. MAX5 BLAST analysis
- 18. MAX5 alignment viewer
- 19. MAX5 sample hunting
- 20. MAX5 parallel computing
- 21. MAX5, TBG, 4Bases,… Plusses Useful introductions. Useful for recruiting. Minuses Very high-level – shallow learning.
- 22. Bioinformatics education games All examples of gamifying
- 23. Genes in Space Fly a spaceship (oh
- 24. The Cure game Alternate turns picking a
- 25. Classroom uses The Cure story (Antoine Taly)
- 26. “Game” Soccer Chess World of Warcraft Halo
- 27. Game: defining traits A goal Rules Feedback system Voluntary participation
- 28. Games…? Running – no Answering questions
- 29. Gamification Google: “the application of typical elements of game playing to other areas of activity…”
- 30. Gamified education. Sort of games…
- 31. CACAO Rules Students form teams In each
- 32. CACAO participation Since 2010, 1000+ students
- 33. Rosalind.info Rosalind is a platform for learning
- 34. “Storm the bioinformatics stronghold now!”
- 35. Problems: 228 (total), users: 18194, attempts: 296869, correct: 172873
- 36. Rosalind user profile
- 37. Rosalind leaderboard
- 38. Use of games/gamification in bioinformatics education Expressivity:
- 39. Future Directions Slowly pushing towards the holy
- 40. http://yako.io System for teachers to create lessons
- 41. Acknowledgements Jerome Waldispuhl (Phylo) Daniel Perry (MAX5)
- 43. Heroic Purpose Biology and medicine provide a
- 44. Finding educational bioinformatics games http://www.sciencegamecenter.org/ Lists about
- 45. Fun Google define:fun “enjoyment, amusement, or lighthearted
Why games? Attention!!!
Слайд 4Recruiting bioinformaticians
“We're hopefully going to change the way science is done,
and who it's done by”
Zoran Popović
University of Washington
Foldit, a game for protein folding
Слайд 5Foldit players come from many backgrounds
Top 50 players
Busn/finance/legal
largest group..
Majority
have no training in biochemistry
Cooper, Seth, et al. "Predicting protein structures with a multiplayer online game." Nature 466.7307 (2010): 756-760.
Слайд 6Teaching with games
“The use of educational games within learning environments raises
motivation, increases interest in the subject matter, intensifies information retention, encourages collaboration, and improves problem-solving skills.”
Schneider, Maria Victoria, and Rafael C. Jimenez. "Teaching the fundamentals of biological data integration using classroom games." PLoS computational biology 8.12 (2012)
Quoting: Michael D, Chen S (2006) Serious games: games that educate, train and inform. Boston: Thomson Course Technology.”
Слайд 7Games can be used to teach
Stegman, Melanie. "Immune Attack players perform
better on a test of cellular immunology and self confidence than their classmates who play a control video game." Faraday Discuss 169 (2014): 1-20.
Immune Attack
http://ImmuneDefenseGame.com
High school students
First person shooter game
Significantly improves understanding of concepts in immunology
Слайд 124bases (Rostlab, masters thesis)
Click the next base in time as the
sequence scrolls by.
Introduces concept of DNA sequencing
Introduces concept of DNA sequencing
Click next base
Слайд 13MAX5
Goal: introduce the concepts and purposes of DNA sequence comparisons (BLAST)
and distributed computing to high school students
First person game set in 3-d world beset by an influenza pandemic.
http://gamestem.com/portfolio/max5-storyline-1/
First person game set in 3-d world beset by an influenza pandemic.
http://gamestem.com/portfolio/max5-storyline-1/
Perry, Daniel, et al. "Human centered game design for bioinformatics and cyberinfrastructure learning." Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery. ACM, 2013.
Слайд 21MAX5, TBG, 4Bases,…
Plusses
Useful introductions.
Useful for recruiting.
Minuses
Very high-level – shallow learning.
Слайд 22Bioinformatics education games
All examples of gamifying tasks in bioinformatics.
None built for
the purpose of education!
Слайд 23Genes in Space
Fly a spaceship
(oh by the way you are helping
cancer research)
300,000 downloads 3 months..
Cancer UK project.
300,000 downloads 3 months..
Cancer UK project.
Слайд 25Classroom uses
The Cure story (Antoine Taly) http://tinyurl.com/talycure
Goal: understand the concept of
Biomarkers
Watch short video
Play The Cure game (involves picking genes useful for predicting breast cancer survival)
Create custom predictive decision tree
Write essay about what you did
Watch short video
Play The Cure game (involves picking genes useful for predicting breast cancer survival)
Create custom predictive decision tree
Write essay about what you did
Слайд 26“Game”
Soccer
Chess
World of Warcraft
Halo
Super Mario Brothers
The Game of Life
Monopoly
Angry Birds
Poker
Doom
Pacman
The Sims
Spore
Civilization
Слайд 28Games…?
Running – no
Answering questions about programming – no
Programming – no
A goal
Rules
Feedback
system
Voluntary participation
Voluntary participation
Nike+ Fuelband – yes
Stackoverflow – yes
TopCoder.com – yes
Слайд 29Gamification
Google: “the application of typical elements of game playing to other
areas of activity…”
Слайд 31CACAO Rules
Students form teams
In each of a series of “innings”:
They are
presented with (or find themselves) lists of proteins
They look up articles about them and try to create GO annotations.
The team gets points for complete, correct annotations
At the end of the inning they can “challenge” the annotations of other teams and steal their points. (Like Scrabble!!)
They look up articles about them and try to create GO annotations.
The team gets points for complete, correct annotations
At the end of the inning they can “challenge” the annotations of other teams and steal their points. (Like Scrabble!!)
Jim Hu, Texas A&M (TAMU) http://gonuts.tamu.edu/wiki/index.php/Cacao_rules
Слайд 32CACAO participation
Since 2010,
1000+ students
15 universities
2,800+ new, acceptable annotations
No empirical
evidence that gamification helps, but anecdotally everyone likes it..
Example teams from 2013
Слайд 33Rosalind.info
Rosalind is a platform for learning bioinformatics and programming through problem
solving.
Python Village
(learn programming)
Bioinformatics Stronghold
(learn algorithms)
Bioinformatics Armory
(learn tools)
Textbook exercises
Слайд 38Use of games/gamification in bioinformatics education
Expressivity: Number and depth of learnable
concepts
Fun
Benefits: recruiting, engagement
Holy Grail
Слайд 39Future Directions
Slowly pushing towards the holy grail(s)
Example: ‘Cyclo6’ will attempt
to teach advanced organic chemistry – to be released on the app store this fall.
Removing boundaries that divide scientific games from each other and from other games
Genes in Space team – integration directly inside the context of “The Impossible Line” by Chilingo
Yako.io
Removing boundaries that divide scientific games from each other and from other games
Genes in Space team – integration directly inside the context of “The Impossible Line” by Chilingo
Yako.io
Слайд 40http://yako.io
System for teachers to create lessons that move students through specified
levels of multiple games.
Jerome Waldispuhl,
McGill University, Phylo
Jerome Waldispuhl,
McGill University, Phylo
Слайд 41Acknowledgements
Jerome Waldispuhl (Phylo)
Daniel Perry (MAX5)
Antoine Taly (pioneering the use of games
(Foldit, Phylo, The Cure) in his courses)
Julia Winter (Cyclo6)
Jim Hu (CACAO)
Melanie Stegman
http://www.sciencegamecenter.org
http://ImmuneDefenseGame.com
Julia Winter (Cyclo6)
Jim Hu (CACAO)
Melanie Stegman
http://www.sciencegamecenter.org
http://ImmuneDefenseGame.com
Funding
Andrew Su
Слайд 43Heroic Purpose
Biology and medicine provide a heroic purpose – not unlike
the more standard purpose of saving the world from aliens.
There are great games to be made and great bioinformaticians to be discovered!
There are great games to be made and great bioinformaticians to be discovered!
BIOINFORMATICIAN
Слайд 44Finding educational bioinformatics games
http://www.sciencegamecenter.org/
Lists about 95 games related to science
57 are
tagged with “biology”
2 with “computer science”
None focus on bioinformatics learning objectives.
2 with “computer science”
None focus on bioinformatics learning objectives.
Melanie Stegman
Federation of American Scientists
Слайд 45Fun
Google define:fun “enjoyment, amusement, or lighthearted pleasure”
“Fun” from game design guru
Raph Koster
“the act of mastering a problem mentally”
“the feedback the brain gives us when we are absorbing patterns for learning purposes”
“fun is about learning in a context where there is no pressure, and that is why games matter”
“the act of mastering a problem mentally”
“the feedback the brain gives us when we are absorbing patterns for learning purposes”
“fun is about learning in a context where there is no pressure, and that is why games matter”
