News Highlights: Jul 2, 2010
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SaaSScience as a Service презентация
Содержание
- 1. SaaSScience as a Service
- 3. Science is different
- 4. Science as a service
- 6. Evolution of Biomedical researchers
- 7. Nature: Milestones in DNA 1977 DNA
- 8. The Trend of NGS BRIEFINGS IN BIOINFORMATICS. VOL 11. NO 5. 484 ^ 498
- 9. Illumina's Certified Service Providers www.illumina.com/services/cspro.ilmn
- 10. Personal Genome and Clinical Business
- 11. http://news.sciencemag.org/scienceinsider/2010/06/uk-to-sequence-10000-genomes.html
- 12. NHGRI’s New Sequencing Projects Genome Sequencing Near
- 13. The Trend of NGS ivory.idyll.org/permanent/lstein-ngs-capacity.png
- 14. Challenges for Biomedical researchers
- 15. Solve It Using Cloud Computing http://genomebiology.com/2010/11/5/207
- 16. ``Cloud Computing’’ in PubMed
- 17. Biomedical Institutes hug cloud computing J.
- 18. Startup Companies
- 21. Galaxy Cloud http://www.biomedcentral.com/1471-2105/11/S12/S4
- 22. Galaxy Cloud
- 23. Parallel Algorithms Spectrum
- 24. CloudBurst
- 26. RNAseq Unified Mapper (RUM)
- 27. Myrna
- 29. Contrail
- 30. What’s Next? Alternative expression Allelic expression Structural
- 33. NGS economics
- 34. NGS economics
- 35. NGS economics on clouds 2 1 3 4
- 36. Voila! RNA-Seq Data Analysis
- 38. IaaS Infrastructure as a Service PaaS Platform
- 39. Eating your own dog food
- 42. Science as a service Service as a science
- 43. Loose coupled interdisciplinary
- 44. Service science and cloud computing HPC on
- 45. THANK YOU
Science is different
Слайд 7Nature: Milestones in DNA
1977
DNA sequencing
1990
BLAST
2002
UCSC Genome browser
2004
Ensembl
Figure from http://www.nature.com/milestones/miledna/timeline.html
Слайд 12NHGRI’s New Sequencing Projects
Genome Sequencing
Near $85 million in the first year
Mendelian
Disorders
$12 million per year
Clinical Exploration
$10.3 million per year
Informatics Tools
$20 million for four years
$12 million per year
Clinical Exploration
$10.3 million per year
Informatics Tools
$20 million for four years
http://www.genome.gov/27546261
Слайд 17Biomedical Institutes hug cloud computing
J. Craig Venter Institute released JCVI
CLOUD BIO-LINUX
IBM eX5 Improves Next Generation Sequencing for Sanger Institute
ISB made Trans-Proteomic Pipeline (TPP) on clouds.
IBM eX5 Improves Next Generation Sequencing for Sanger Institute
ISB made Trans-Proteomic Pipeline (TPP) on clouds.
Слайд 30What’s Next?
Alternative expression
Allelic expression
Structural variation
Epigenomics
Metagenomics
Biological data/text mining
Hapotype/Hapomap
K thousand genomes
Слайд 38IaaS
Infrastructure as a Service
PaaS
Platform as a Service
SaaS
Software as a Service
Cloud Service
Models for Scientists
www.spoutingshite.com/wp-content/uploads/2008/12/saas_and_cloud_computing.ppt
Слайд 44Service science and cloud computing
HPC on cloud computing of NGS
Data Transfer
Bottlenecks
Streaming Computing
Cost of Cloud Storage
Community Cloud Developing
App. Exchange of bioinformatics
Streaming Computing
Cost of Cloud Storage
Community Cloud Developing
App. Exchange of bioinformatics
