The Dark Cycle (Calvin Cycle), or more descriptively, the carbon reactions of photosynthesis
~200 billion tons of CO2 are converted to biomass each year
The enzyme ribulose biphosphate carboxylase/oxygenase, Rubisco, that incorporates CO2 is 40% of the protein in most leaves.
Reduction of 3-phosphoglycerate to form glyceraldehyde-3-phosphate which can be used in formation of carbon compounds that are translocated.
Regeneration of the CO2 acceptor ribulose-1, 5-biphosphate from glyceraldehyde-3-phosphate
The negative change in free energy associated with carboxylation of RuBP is large so the forward reaction is favored.
RuBP
Rubisco will also take O2 rather than CO2 and oxygenate RuBP – called photorespiration.
The rate of operation of the Calvin Cycle can be enhanced by increases in the concentration of its intermediates. That is the cycle is autocatalytic.
Also, if there are insufficient intermediates available, for example when a plant is transferred from dark to light, then there is a lag, or induction period, before photosynthesis reaches the level that the light can sustain. (There can also be enzyme induction.)
Rubisco is notoriously inefficient as a catalyst for the carboxylation of RuBP and is subject to competitive inhibition by O2, inactivation by loss of carbamylation, and dead-end inhibition by RuBP. These inadequacies make Rubisco rate limiting for photosynthesis and an obvious target for increasing agricultural productivity. Really?
In the presence of higher O2 levels, photosynthesis rates are lower.
The inhibition of photosynthesis by O2 was first noticed by the German plant physiologist, Otto Warburg, in 1920, and called the "Warburg effect".
The first product of CO2 fixation is malate (C4) in mesophyll cells, not PGA as it is in C3 plants. This is transported to bundle sheath cells
CO2 is released from malate in bundle sheath cells, where it is fixed again by Rubisco and the Calvin cycle proceeds. PEP is recycled back to mesophyll cells.
This enables C4 plants to sustain higher rates of photosynthesis. And, because the concentration of CO2 relative to O2 in bundle sheath cells is higher, photorespiration rates are lower.
C4 Photosynthesis
CAM plants open their stomates at night. This conserves H2O. CO2 is assimilated into malic acid and stored in high concentrations in cell vacuoles
During the day, stomates close, and the stored malic acid is gradually recycled to release CO2 to the Calvin cycle
First discovered in succulents of the Crassulacea: e.g.,sedums
δ13C
εp = εf = +27‰
εf
0
0.5
1.0
Fraction C leaked (φ3/φ1 ∝ Ci/Ca)
δi
δf
δ1
εp = δa - δf = εt + (Ci/Ca)(εf-εt)
εp = εta+[εPEP-7.9+L(εf-εtw)-εta](Ci/Ca)
Under arid conditions, succulent CAM plants use PEP to fix CO2 to malate at night and then use RUBISCO for final C fixation during the daytime. The L value for this is typically higher than 0.38. Under more humid conditions, they will directly fix CO2 during the day using RUBISCO. As a consequence, they have higher, and more variable, εp values.
εp = 4.4+[-10.1+L(26.3)](Ci/Ca)
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